![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676754854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 375aa MW: 42339.9 Da PI: 6.7453 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.3e-05 | 209 | 228 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ 676754854 209 FSCPVCFKTFNRYNNMQMHM 228 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 293 | 315 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ 676754854 293 FMCRKCGKAFAVRGDWRTHEKNC 315 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.38 | 209 | 231 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.64 | 209 | 236 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.4E-6 | 209 | 228 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 211 | 231 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.82E-6 | 275 | 313 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 289 | 313 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 49 | 293 | 313 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.808 | 293 | 313 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:1990058 | Biological Process | fruit replum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 375 aa Download sequence Send to blast |
MTDPYSNFFT DWFKSNPFPH YPNSSTNPSP PPPPSSFFFF PHSGDLHRPP PPPTPPPSPP 60 LREALPLLSL SPANKQQDHH DHQIQEPPST SMDVDYDHHH HQDDHNIDED DHDVTVALHI 120 GLPSPSTQEM ASLLMMSSSS SSSRTTHHHE NLNDKKDLDN DYHHGGAGGG EDDDEDSVGG 180 DGGCRISRLN KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE 240 SLRGTQPTGM LRLPCYCCAP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI KPFMCRKCGK 300 AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GNGHGAYGID GFDEEDEPAS 360 EVEQLDNDHE SMQSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF254447 | 0.0 | AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds. | |||
GenBank | BT021089 | 0.0 | BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104073.1 | 0.0 | PREDICTED: protein TRANSPARENT TESTA 1-like isoform X2 | ||||
Swissprot | Q9SVY1 | 0.0 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A0D3CUE3 | 0.0 | A0A0D3CUE3_BRAOL; Uncharacterized protein | ||||
STRING | AT3G57670.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-172 | C2H2 family protein |